<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ProteomeXchangeDataset id="PXD013255" formatVersion="1.3.0" xsi:noNamespaceSchemaLocation="proteomeXchange-1.3.0.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<CvList>
<Cv fullName="PSI-MS" uri="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo" id="MS"/>
<Cv fullName="PRIDE" uri="https://raw.githubusercontent.com/PRIDE-Utilities/pride-ontology/master/pride_cv.obo" id="PRIDE"/>
<Cv fullName="PSI-MOD" uri="https://raw.githubusercontent.com/MICommunity/psidev/master/psi/mod/data/PSI-MOD.obo" id="MOD"/>
<Cv fullName="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" id="UNIMOD"/>
</CvList>
<ChangeLog>
<ChangeLogEntry date="2019-08-20">Updated publication reference for PubMed record(s): 31415606.</ChangeLogEntry>
</ChangeLog>
<DatasetSummary announceDate="2019-08-16" hostingRepository="PRIDE" title="Evaluation of sodium deoxycholate as solubilization buffer">
<Description>Sodium deoxycholate was evaluated as alternative protein solubilization buffer to a more commonly used urea/thiourea buffer. Sodium deoxycholate was found to have similar efficiency as of urea/thiourea buffer in solubilizing proteins from oil palm fruit mesocarps.</Description>
<ReviewLevel>
<cvParam cvRef="PRIDE" accession="PRIDE:0000414" name="Peer-reviewed dataset"/>
</ReviewLevel>
<RepositorySupport>
<cvParam cvRef="PRIDE" accession="PRIDE:0000416" name="Supported dataset by repository"/>
</RepositorySupport>
</DatasetSummary>
<DatasetIdentifierList>
<DatasetIdentifier>
<cvParam cvRef="MS" accession="MS:1001919" name="ProteomeXchange accession number" value="PXD013255"/>
</DatasetIdentifier>
<DatasetIdentifier>
<cvParam cvRef="MS" accession="MS:1001922" name="Digital Object Identifier (DOI)" value="10.6019/PXD013255"/>
</DatasetIdentifier>
</DatasetIdentifierList>
<DatasetOriginList>
<DatasetOrigin>
<cvParam cvRef="PRIDE" accession="PRIDE:0000402" name="Original data"/>
</DatasetOrigin>
</DatasetOriginList>
<SpeciesList>
<Species>
<cvParam cvRef="MS" accession="MS:1001469" name="taxonomy: scientific name" value="Elaeis guineensis"/>
<cvParam cvRef="MS" accession="MS:1001467" name="taxonomy: NCBI TaxID" value="51953"/>
</Species>
</SpeciesList>
<InstrumentList>
<Instrument id="Instrument_1">
<cvParam cvRef="MS" accession="MS:1001911" name="Q Exactive"/>
</Instrument>
</InstrumentList>
<ModificationList>
<cvParam cvRef="UNIMOD" accession="UNIMOD:7" name="Deamidated"/>
<cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
<cvParam cvRef="UNIMOD" accession="UNIMOD:1" name="Acetyl"/>
<cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/>
</ModificationList>
<ContactList>
<Contact id="project_submitter">
<cvParam cvRef="MS" accession="MS:1000586" name="contact name" value="Benjamin Lau"/>
<cvParam cvRef="MS" accession="MS:1000589" name="contact email" value="benjamin@mpob.gov.my"/>
<cvParam cvRef="MS" accession="MS:1000590" name="contact affiliation" value="Malaysian Palm Oil Board"/>
<cvParam cvRef="MS" accession="MS:1002037" name="dataset submitter"/>
</Contact>
<Contact id="project_lab_head">
<cvParam cvRef="MS" accession="MS:1002332" name="lab head"/>
<cvParam cvRef="MS" accession="MS:1000586" name="contact name" value="Benjamin Lau Yii Chung"/>
<cvParam cvRef="MS" accession="MS:1000589" name="contact email" value="benjamin@mpob.gov.my"/>
<cvParam cvRef="MS" accession="MS:1000590" name="contact affiliation" value="Malaysian Palm Oil Board"/>
</Contact>
</ContactList>
<PublicationList>
<Publication id="PMID31415606">
<cvParam cvRef="MS" accession="MS:1000879" name="PubMed identifier" value="31415606"/>
<cvParam cvRef="PRIDE" accession="PRIDE:0000400" name="Reference" value="Lau BYC, Othman A. Evaluation of sodium deoxycholate as solubilization buffer for oil palm proteomics analysis. PLoS One. 2019 14(8):e0221052"/>
</Publication>
</PublicationList>
<KeywordList>
<cvParam cvRef="MS" accession="MS:1001925" name="submitter keyword" value="sodium deoxycholate, proteomics, oil palm"/>
</KeywordList>
<FullDatasetLinkList>
<FullDatasetLink>
<cvParam cvRef="PRIDE" accession="PRIDE:0000411" name="Dataset FTP location" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255"/>
</FullDatasetLink>
<FullDatasetLink>
<cvParam cvRef="MS" accession="MS:1001930" name="PRIDE project URI" value="http://www.ebi.ac.uk/pride/archive/projects/PXD013255"/>
</FullDatasetLink>
</FullDatasetLinkList>
<DatasetFileList>
<DatasetFile id="FILE_25" name="20190620_BufA_01.raw">
<cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/20190620_BufA_01.raw"/>
</DatasetFile>
<DatasetFile id="FILE_26" name="20190620_BufA_02.raw">
<cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/20190620_BufA_02.raw"/>
</DatasetFile>
<DatasetFile id="FILE_27" name="20190620_BufA_03.raw">
<cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/20190620_BufA_03.raw"/>
</DatasetFile>
<DatasetFile id="FILE_28" name="20190620_BufA_04.raw">
<cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/20190620_BufA_04.raw"/>
</DatasetFile>
<DatasetFile id="FILE_29" name="20190620_BufB_01.raw">
<cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/20190620_BufB_01.raw"/>
</DatasetFile>
<DatasetFile id="FILE_30" name="20190620_BufB_02.raw">
<cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/20190620_BufB_02.raw"/>
</DatasetFile>
<DatasetFile id="FILE_31" name="20190620_BufB_03.raw">
<cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/20190620_BufB_03.raw"/>
</DatasetFile>
<DatasetFile id="FILE_32" name="20190620_BufB_04.raw">
<cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/20190620_BufB_04.raw"/>
</DatasetFile>
<DatasetFile id="FILE_33" name="20190620_BufC_01.raw">
<cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/20190620_BufC_01.raw"/>
</DatasetFile>
<DatasetFile id="FILE_34" name="20190620_BufC_02.raw">
<cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/20190620_BufC_02.raw"/>
</DatasetFile>
<DatasetFile id="FILE_35" name="20190620_BufC_03.raw">
<cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/20190620_BufC_03.raw"/>
</DatasetFile>
<DatasetFile id="FILE_36" name="20190620_BufC_04.raw">
<cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/20190620_BufC_04.raw"/>
</DatasetFile>
<DatasetFile id="FILE_37" name="20190620_DOC_01.raw">
<cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/20190620_DOC_01.raw"/>
</DatasetFile>
<DatasetFile id="FILE_38" name="20190620_DOC_02.raw">
<cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/20190620_DOC_02.raw"/>
</DatasetFile>
<DatasetFile id="FILE_39" name="20190620_DOC_03.raw">
<cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/20190620_DOC_03.raw"/>
</DatasetFile>
<DatasetFile id="FILE_40" name="20190620_DOC_04.raw">
<cvParam cvRef="PRIDE" accession="PRIDE:0000404" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/20190620_DOC_04.raw"/>
</DatasetFile>
<DatasetFile id="FILE_41" name="BufA.mzid.gz">
<cvParam cvRef="PRIDE" accession="PRIDE:0000407" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/BufA.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_42" name="BufB.mzid.gz">
<cvParam cvRef="PRIDE" accession="PRIDE:0000407" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/BufB.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_43" name="BufC.mzid.gz">
<cvParam cvRef="PRIDE" accession="PRIDE:0000407" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/BufC.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_44" name="BufD.mzid.gz">
<cvParam cvRef="PRIDE" accession="PRIDE:0000407" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/BufD.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_45" name="BufA.mzML">
<cvParam cvRef="PRIDE" accession="PRIDE:0000409" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/BufA.mzML"/>
</DatasetFile>
<DatasetFile id="FILE_46" name="BufB.mzML">
<cvParam cvRef="PRIDE" accession="PRIDE:0000409" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/BufB.mzML"/>
</DatasetFile>
<DatasetFile id="FILE_47" name="BufC.mzML">
<cvParam cvRef="PRIDE" accession="PRIDE:0000409" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/BufC.mzML"/>
</DatasetFile>
<DatasetFile id="FILE_48" name="BufD.mzML">
<cvParam cvRef="PRIDE" accession="PRIDE:0000409" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013255/BufD.mzML"/>
</DatasetFile>
</DatasetFileList>
<RepositoryRecordList>
<RepositoryRecord name="Evaluation of sodium deoxycholate as solubilization buffer" label="PRIDE project" recordID="PXD013255" repositoryID="PRIDE" uri="http://www.ebi.ac.uk/pride/archive/projects/PXD013255"/>
</RepositoryRecordList>
</ProteomeXchangeDataset>