<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ProteomeXchangeDataset id="PXD033581" formatVersion="1.4.0" xsi:noNamespaceSchemaLocation="proteomeXchange-1.4.0.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<CvList>
<Cv fullName="PSI-MS" uri="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo" id="MS"/>
<Cv fullName="PSI-MOD" uri="https://raw.githubusercontent.com/MICommunity/psidev/master/psi/mod/data/PSI-MOD.obo" id="MOD"/>
<Cv fullName="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" id="UNIMOD"/>
</CvList>
<ChangeLog>
<ChangeLogEntry date="2023-11-14">Updated project metadata.</ChangeLogEntry>
</ChangeLog>
<DatasetSummary announceDate="2023-11-14" hostingRepository="PRIDE" title="Chinese hamster ovary (CHO) cell Surfaceome LC-MSMS and mRNA expression analysis">
<Description>The production of biopharmaceuticals relies on robust cell systems that can produce recombinant proteins at high levels, and grow and survive in the stressful bioprocess environment. Chinese hamster ovary cells (CHO) as the main production hosts offer a variety of advantages including robust growth and survival in a bioprocess environment. Cell surface proteins are of special interest for the understanding of how CHO cells react to their environment while maintaining growth and survival phenotypes, since they enable cellular reactions to external stimuli and potentially initiate signaling pathways. To provide deeper insight into functions of this special cell surface sub-proteome, pathway enrichment analysis of the determined CHO surfaceome was conducted. Enrichment of growth/ survival pathways such as the phosphoinositide-3-kinase (PI3K/AKT), Mitogen-activated protein kinase (MAPK), Janus kinase/signal transducers and activators of transcription (JAK-STAT) and RAP1 pathways was observed, offering novel insights into how cell surface receptors and ligand mediated signaling enable the cells to grow and survive in a bioprocess environment. When supplementing surfaceome data with RNA expression data, several growth/ survival-receptors were shown to be co-expressed with their respective ligands and thus suggesting self-induction mechanisms, while other receptors or ligands were not detectable. As data about the presence of surface receptors and their associated expressed ligands may serve as base for future studies, further pathway characterization will enable the implementation of optimization strategies to further enhance cellular growth and survival behavior.</Description>
<ReviewLevel>
<cvParam cvRef="MS" accession="MS:1002854" name="Peer-reviewed dataset"/>
</ReviewLevel>
<RepositorySupport>
<cvParam cvRef="MS" accession="MS:1002856" name="Supported dataset by repository"/>
</RepositorySupport>
</DatasetSummary>
<DatasetIdentifierList>
<DatasetIdentifier>
<cvParam cvRef="MS" accession="MS:1001919" name="ProteomeXchange accession number" value="PXD033581"/>
<cvParam cvRef="MS" accession="MS:1001921" name="ProteomeXchange accession number version number" value="2"/>
</DatasetIdentifier>
<DatasetIdentifier>
<cvParam cvRef="MS" accession="MS:1001922" name="Digital Object Identifier (DOI)" value="10.6019/PXD033581"/>
</DatasetIdentifier>
</DatasetIdentifierList>
<DatasetOriginList>
<DatasetOrigin>
<cvParam cvRef="MS" accession="MS:1002868" name="Original data"/>
</DatasetOrigin>
</DatasetOriginList>
<SpeciesList>
<Species>
<cvParam cvRef="MS" accession="MS:1001469" name="taxonomy: scientific name" value="Cricetulus griseus (Chinese hamster) (Cricetulus barabensis griseus)"/>
<cvParam cvRef="MS" accession="MS:1001467" name="taxonomy: NCBI TaxID" value="10029"/>
</Species>
</SpeciesList>
<InstrumentList>
<Instrument id="Instrument_1">
<cvParam cvRef="MS" accession="MS:1002877" name="Q Exactive HF-X"/>
</Instrument>
</InstrumentList>
<ModificationList>
<cvParam cvRef="MOD" accession="MOD:01885" name="biotinylated residue"/>
<cvParam cvRef="MOD" accession="MOD:00425" name="monohydroxylated residue"/>
<cvParam cvRef="MOD" accession="MOD:00397" name="iodoacetamide derivatized residue"/>
</ModificationList>
<ContactList>
<Contact id="project_submitter">
<cvParam cvRef="MS" accession="MS:1000586" name="contact name" value="Jens Pfannstiel"/>
<cvParam cvRef="MS" accession="MS:1000589" name="contact email" value="Jens.Pfannstiel@uni-hohenheim.de"/>
<cvParam cvRef="MS" accession="MS:1000590" name="contact affiliation" value="University of Hohenheim"/>
<cvParam cvRef="MS" accession="MS:1002037" name="dataset submitter"/>
</Contact>
<Contact id="project_lab_head">
<cvParam cvRef="MS" accession="MS:1002332" name="lab head"/>
<cvParam cvRef="MS" accession="MS:1000586" name="contact name" value="Kerstin Otte"/>
<cvParam cvRef="MS" accession="MS:1000589" name="contact email" value="otte@hochschule-bc.de"/>
<cvParam cvRef="MS" accession="MS:1000590" name="contact affiliation" value="Prof. Dr. Kerstin Otte Hochschule Biberach, University of Applied Sciences Molecular and Cell Biology Karlstraße 11 88400 Biberach Germany"/>
</Contact>
</ContactList>
<PublicationList>
<Publication id="PMID33951178">
<cvParam cvRef="MS" accession="MS:1000879" name="PubMed identifier" value="33951178"/>
<cvParam cvRef="MS" accession="MS:1002866" name="Reference" value="Klingler F, Mathias S, Schneider H, Buck T, Raab N, Zeh N, Shieh YW, Pfannstiel J, Otte K. Unveiling the CHO surfaceome: Identification of cell surface proteins reveals cell aggregation-relevant mechanisms. Biotechnol Bioeng. 2021 118(8):3015-3028"/>
</Publication>
<Publication id="PMID36038753">
<cvParam cvRef="MS" accession="MS:1000879" name="PubMed identifier" value="36038753"/>
<cvParam cvRef="MS" accession="MS:1002866" name="Reference" value="Jerabek T, Klingler F, Raab N, Zeh N, Pfannstiel J, Otte K. Life at the periphery: what makes CHO cells survival talents. Appl Microbiol Biotechnol. 2022 106(18):6157-6167"/>
</Publication>
<Publication id="DOI-10_6019_PXD033581">
<cvParam cvRef="MS" accession="MS:1001922" name="Digital Object Identifier (DOI)" value="10.6019/PXD033581"/>
</Publication>
</PublicationList>
<KeywordList>
<cvParam cvRef="MS" accession="MS:1001925" name="submitter keyword" value="LC-MSMS, signaling pathways, mRNA expression,CHO cells, Surfaceome"/>
</KeywordList>
<FullDatasetLinkList>
<FullDatasetLink>
<cvParam cvRef="MS" accession="MS:1002852" name="Dataset FTP location" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581"/>
</FullDatasetLink>
<FullDatasetLink>
<cvParam cvRef="MS" accession="MS:1001930" name="PRIDE project URI" value="http://www.ebi.ac.uk/pride/archive/projects/PXD033581"/>
</FullDatasetLink>
</FullDatasetLinkList>
<DatasetFileList>
<DatasetFile id="FILE_1" name="CHO_DG44_3__F006869_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_3__F006869_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_2" name="DG44_Elu3__F006612_.mzid_DG44_Elu3__F006612_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/DG44_Elu3__F006612_.mzid_DG44_Elu3__F006612_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_3" name="DG44_Elu3__F006612_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/DG44_Elu3__F006612_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_4" name="DG44_Elu1__F006614_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/DG44_Elu1__F006614_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_5" name="CSC_BIBH1_1__F007351_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CSC_BIBH1_1__F007351_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_6" name="CHO_DG44_Elu1__F006181_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_Elu1__F006181_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_7" name="CHO_K1_83_14_2_1__F007471_.mzid_CHO_K1_83_14_2_1__F007471_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_83_14_2_1__F007471_.mzid_CHO_K1_83_14_2_1__F007471_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_8" name="CHO_K1_83_14_2_2__F007470_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_83_14_2_2__F007470_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_9" name="CSC_BIBH1_1__F007351_.mzid_CSC_BIBH1_1__F007351_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CSC_BIBH1_1__F007351_.mzid_CSC_BIBH1_1__F007351_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_10" name="CHO_DG44_3__F006869_.mzid_CHO_DG44_3__F006869_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_3__F006869_.mzid_CHO_DG44_3__F006869_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_11" name="CHO_K1_3__F006865_.mzid_CHO_K1_3__F006865_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_3__F006865_.mzid_CHO_K1_3__F006865_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_12" name="CHO_DG44_1__F006871_.mzid_CHO_DG44_1__F006871_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_1__F006871_.mzid_CHO_DG44_1__F006871_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_13" name="CHO_K1_83_14_2_3__F007469_.mzid_CHO_K1_83_14_2_3__F007469_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_83_14_2_3__F007469_.mzid_CHO_K1_83_14_2_3__F007469_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_14" name="CHO_DG44_Elu3__F006183_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_Elu3__F006183_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_15" name="CHO_DG44_2__F006870_.mzid_CHO_DG44_2__F006870_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_2__F006870_.mzid_CHO_DG44_2__F006870_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_16" name="CSC_BIBH1_2__F007350_.mzid_CSC_BIBH1_2__F007350_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CSC_BIBH1_2__F007350_.mzid_CSC_BIBH1_2__F007350_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_17" name="CHO_K1_Elu2__F006179_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Elu2__F006179_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_18" name="CHO_K1_Elu3__F006180_.mzid_CHO_K1_Elu3__F006180_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Elu3__F006180_.mzid_CHO_K1_Elu3__F006180_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_19" name="DG44_Elu2__F006613_.mzid_DG44_Elu2__F006613_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/DG44_Elu2__F006613_.mzid_DG44_Elu2__F006613_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_20" name="CSC_BIBH1_3__F007348_.mzid_CSC_BIBH1_3__F007348_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CSC_BIBH1_3__F007348_.mzid_CSC_BIBH1_3__F007348_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_21" name="Elu3__F005984_.mzid_Elu3__F005984_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/Elu3__F005984_.mzid_Elu3__F005984_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_22" name="CHO_K1_3__F006865_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_3__F006865_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_23" name="CHO_K1_Mock_3_1__F007468_.mzid_CHO_K1_Mock_3_1__F007468_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Mock_3_1__F007468_.mzid_CHO_K1_Mock_3_1__F007468_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_24" name="Elu3__F005984_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/Elu3__F005984_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_25" name="CHO_DG44_Elu2__F006182_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_Elu2__F006182_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_26" name="CSC_BIBH1_3__F007348_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CSC_BIBH1_3__F007348_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_27" name="Elu2__F005985_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/Elu2__F005985_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_28" name="CHO_K1_Mock_3_3.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Mock_3_3.raw"/>
</DatasetFile>
<DatasetFile id="FILE_29" name="CHO_DG44_1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_30" name="Elu2__F005985_.mzid_Elu2__F005985_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/Elu2__F005985_.mzid_Elu2__F005985_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_31" name="CHO_K1_1__F006868_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_1__F006868_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_32" name="CHO_K1_1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_33" name="CHO_DG44_Elu1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_Elu1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_34" name="Elu1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/Elu1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_35" name="CHO_DG44_Elu3.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_Elu3.raw"/>
</DatasetFile>
<DatasetFile id="FILE_36" name="CHO_DG44_3.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_3.raw"/>
</DatasetFile>
<DatasetFile id="FILE_37" name="CHO_DG44_2.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_2.raw"/>
</DatasetFile>
<DatasetFile id="FILE_38" name="CHO_K1_3.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_3.raw"/>
</DatasetFile>
<DatasetFile id="FILE_39" name="DG44_Elu2.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/DG44_Elu2.raw"/>
</DatasetFile>
<DatasetFile id="FILE_40" name="checksum.txt">
<cvParam cvRef="MS" accession="MS:1002851" name="Other type file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/checksum.txt"/>
</DatasetFile>
<DatasetFile id="FILE_41" name="CHO_DG44_Elu2.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_Elu2.raw"/>
</DatasetFile>
<DatasetFile id="FILE_42" name="CHO_K1_83_14_2_1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_83_14_2_1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_43" name="CHO_K1_Elu2__F006179_.mzid_CHO_K1_Elu2__F006179_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Elu2__F006179_.mzid_CHO_K1_Elu2__F006179_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_44" name="CHO_K1_Elu2.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Elu2.raw"/>
</DatasetFile>
<DatasetFile id="FILE_45" name="CHO_K1_Mock_3_2__F007467_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Mock_3_2__F007467_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_46" name="DG44_Elu2__F006613_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/DG44_Elu2__F006613_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_47" name="CHO_K1_Mock_3_2__F007467_.mzid_CHO_K1_Mock_3_2__F007467_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Mock_3_2__F007467_.mzid_CHO_K1_Mock_3_2__F007467_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_48" name="CHO_DG44_2__F006870_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_2__F006870_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_49" name="CHO_DG44_1__F006871_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_1__F006871_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_50" name="CHO_K1_83_14_2_1__F007471_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_83_14_2_1__F007471_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_51" name="Elu2.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/Elu2.raw"/>
</DatasetFile>
<DatasetFile id="FILE_52" name="CHO_K1_Mock_3_1__F007468_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Mock_3_1__F007468_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_53" name="CHO_K1_83_14_2_3__F007469_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_83_14_2_3__F007469_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_54" name="CSC_BIBH1_3.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CSC_BIBH1_3.raw"/>
</DatasetFile>
<DatasetFile id="FILE_55" name="CHO_K1_Elu1__F006178_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Elu1__F006178_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_56" name="CHO_K1_2__F006867_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_2__F006867_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_57" name="Elu1__F005986_.mzid_Elu1__F005986_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/Elu1__F005986_.mzid_Elu1__F005986_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_58" name="DG44_Elu1__F006614_.mzid_DG44_Elu1__F006614_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/DG44_Elu1__F006614_.mzid_DG44_Elu1__F006614_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_59" name="CHO_K1_Elu3__F006180_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Elu3__F006180_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_60" name="Elu1__F005986_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/Elu1__F005986_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_61" name="CHO_K1_Mock_3_2.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Mock_3_2.raw"/>
</DatasetFile>
<DatasetFile id="FILE_62" name="DG44_Elu3.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/DG44_Elu3.raw"/>
</DatasetFile>
<DatasetFile id="FILE_63" name="CSC_BIBH1_1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CSC_BIBH1_1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_64" name="CHO_K1_Elu1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Elu1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_65" name="CHO_K1_1__F006868_.mzid_CHO_K1_1__F006868_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_1__F006868_.mzid_CHO_K1_1__F006868_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_66" name="CHO_DG44_Elu1__F006181_.mzid_CHO_DG44_Elu1__F006181_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_Elu1__F006181_.mzid_CHO_DG44_Elu1__F006181_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_67" name="CHO_K1_Elu1__F006178_.mzid_CHO_K1_Elu1__F006178_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Elu1__F006178_.mzid_CHO_K1_Elu1__F006178_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_68" name="CHO_DG44_Elu3__F006183_.mzid_CHO_DG44_Elu3__F006183_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_Elu3__F006183_.mzid_CHO_DG44_Elu3__F006183_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_69" name="CHO_K1_Mock_3_1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Mock_3_1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_70" name="CHO_K1_2__F006867_.mzid_CHO_K1_2__F006867_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_2__F006867_.mzid_CHO_K1_2__F006867_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_71" name="DG44_Elu1.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/DG44_Elu1.raw"/>
</DatasetFile>
<DatasetFile id="FILE_72" name="CHO_K1_83_14_2_3.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_83_14_2_3.raw"/>
</DatasetFile>
<DatasetFile id="FILE_73" name="Uniprot_Cricetulus_170619.fasta">
<cvParam cvRef="MS" accession="MS:1002845" name="Associated file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/Uniprot_Cricetulus_170619.fasta"/>
</DatasetFile>
<DatasetFile id="FILE_74" name="CHO_K1_2.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_2.raw"/>
</DatasetFile>
<DatasetFile id="FILE_75" name="CHO_K1_Elu3.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Elu3.raw"/>
</DatasetFile>
<DatasetFile id="FILE_76" name="CHO_K1_83_14_2_2.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_83_14_2_2.raw"/>
</DatasetFile>
<DatasetFile id="FILE_77" name="CSC_BIBH1_2.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CSC_BIBH1_2.raw"/>
</DatasetFile>
<DatasetFile id="FILE_78" name="CHO_K1_Mock_3_3__F007466_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Mock_3_3__F007466_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_79" name="CHO_K1_Mock_3_3__F007466_.mzid_CHO_K1_Mock_3_3__F007466_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_Mock_3_3__F007466_.mzid_CHO_K1_Mock_3_3__F007466_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_80" name="CSC_BIBH1_2__F007350_.mzid.gz">
<cvParam cvRef="MS" accession="MS:1002848" name="Result file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CSC_BIBH1_2__F007350_.mzid.gz"/>
</DatasetFile>
<DatasetFile id="FILE_81" name="Elu3.raw">
<cvParam cvRef="MS" accession="MS:1002846" name="Associated raw file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/Elu3.raw"/>
</DatasetFile>
<DatasetFile id="FILE_82" name="CHO_K1_83_14_2_2__F007470_.mzid_CHO_K1_83_14_2_2__F007470_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_K1_83_14_2_2__F007470_.mzid_CHO_K1_83_14_2_2__F007470_.MGF"/>
</DatasetFile>
<DatasetFile id="FILE_83" name="CHO_DG44_Elu2__F006182_.mzid_CHO_DG44_Elu2__F006182_.MGF">
<cvParam cvRef="MS" accession="MS:1002850" name="Peak list file URI" value="ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD033581/CHO_DG44_Elu2__F006182_.mzid_CHO_DG44_Elu2__F006182_.MGF"/>
</DatasetFile>
</DatasetFileList>
<RepositoryRecordList>
<RepositoryRecord name="Chinese hamster ovary (CHO) cell Surfaceome LC-MSMS and mRNA expression analysis" label="PRIDE project" recordID="PXD033581" repositoryID="PRIDE" uri="http://www.ebi.ac.uk/pride/archive/projects/PXD033581"/>
</RepositoryRecordList>
</ProteomeXchangeDataset>