PXD028738

PXD028738 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Cervical cancer cell line panel immunopeptidomics datasets
Description	Our extended analysis of the HLA-presented antigen landscape in cervical cancer cells using an integrative proteogenomics approach identifies, next to tumour-associated antigens and tumour-specific neoantigens, presentation of viral canonical, and alternative reading frame (ARF)-derived HLA-presented sequences, including peptides derived from HPV-E1.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:43:00.567.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD028738
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Nicola Ternette
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-09-24 05:57:46	ID requested
1	2023-03-10 20:01:49	announced
2	2023-11-14 08:36:38	announced	2023-11-14: Updated project metadata.
⏵ 3	2024-10-22 05:43:02	announced	2024-10-22: Updated project metadata.

Publication List

10.6019/PXD028738;
10.1016/j.isci.2023.106101;
Peng X, Woodhouse I, Hancock G, Parker R, Marx K, M, ü, ller J, Salatino S, Partridge T, Nicastri A, Liao H, Kruppa G, Hellner K, Dorrell L, Ternette N, Novel canonical and non-canonical viral antigens extend current targets for immunotherapy of HPV-driven cervical cancer. iScience, 26(3):106101(2023) [pubmed]

10.6019/PXD028738;

10.1016/j.isci.2023.106101;

Peng X, Woodhouse I, Hancock G, Parker R, Marx K, M, ü, ller J, Salatino S, Partridge T, Nicastri A, Liao H, Kruppa G, Hellner K, Dorrell L, Ternette N, Novel canonical and non-canonical viral antigens extend current targets for immunotherapy of HPV-driven cervical cancer. iScience, 26(3):106101(2023) [pubmed]

Keyword List

ProteomeXchange project tag: Human Immuno-Peptidome Project (HUPO-HIPP) (B/D-HPP), Biology/Disease-Driven Human Proteome Project (B/D-HPP)
submitter keyword: Human leukocyte antigen-associated peptides,Cervical Cancer, immunopeptidomics, cell line

ProteomeXchange project tag: Human Immuno-Peptidome Project (HUPO-HIPP) (B/D-HPP), Biology/Disease-Driven Human Proteome Project (B/D-HPP)

submitter keyword: Human leukocyte antigen-associated peptides,Cervical Cancer, immunopeptidomics, cell line

Contact List

Nicola Ternette
contact affiliation	University of Oxford
contact email	nicola.ternette@ndm.ox.ac.uk
lab head
Nicola Ternette
contact affiliation	University of Oxford
contact email	nicola.ternette@ndm.ox.ac.uk
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD028738
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD028738

PRIDE project URI

Repository Record List

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