PXD013868

PXD013868 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Arabidopsis proteomic tissue atlas
Description	Qualitative and quantitative atlas of the transcriptomes, proteomes and phosphoproteomes of 30 tissues of the model plant Arabidopsis. We describe how many genes were detected as proteins (>18,000), where they are expressed, in which approximate quantities (>6 logs dynamic range) and to what extent they are post-translationally modified by phosphorylation (>43,000 sites). We also measured protein complexes in three tissues (flower, root, leaf) using size-exclusion chromatography (SEC-MS) and the seed proteome in response to cycloheximide and MG132 treatment.
HostingRepository	PRIDE
AnnounceDate	2020-01-10
AnnouncementXML	Submission_2020-03-24_03:45:17.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Julia Mergner
SpeciesList	scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationList	methionine oxidation with neutral loss of 64 Da; phosphorylated residue; N-acetylated residue
Instrument	Q Exactive HF

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-05-15 23:22:20	ID requested
1	2020-01-10 12:26:40	announced
⏵ 2	2020-03-24 03:45:19	announced	2020-03-24: Updated publication reference for PubMed record(s): 32188942.

Publication List

Mergner J, Frejno M, List M, Papacek M, Chen X, Chaudhary A, Samaras P, Richter S, Shikata H, Messerer M, Lang D, Altmann S, Cyprys P, Zolg DP, Mathieson T, Bantscheff M, Hazarika RR, Schmidt T, Dawid C, Dunkel A, Hofmann T, Sprunck S, Falter-Braun P, Johannes F, Mayer KFX, J, ü, rgens G, Wilhelm M, Baumbach J, Grill E, Schneitz K, Schwechheimer C, Kuster B, Mass-spectrometry-based draft of the Arabidopsis proteome. Nature, 579(7799):409-414(2020) [pubmed]

Mergner J, Frejno M, List M, Papacek M, Chen X, Chaudhary A, Samaras P, Richter S, Shikata H, Messerer M, Lang D, Altmann S, Cyprys P, Zolg DP, Mathieson T, Bantscheff M, Hazarika RR, Schmidt T, Dawid C, Dunkel A, Hofmann T, Sprunck S, Falter-Braun P, Johannes F, Mayer KFX, J, ü, rgens G, Wilhelm M, Baumbach J, Grill E, Schneitz K, Schwechheimer C, Kuster B, Mass-spectrometry-based draft of the Arabidopsis proteome. Nature, 579(7799):409-414(2020) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: Arabidopsis, tissue atlas, proteome, phosphoproteome

curator keyword: Biological

submitter keyword: Arabidopsis, tissue atlas, proteome, phosphoproteome

Contact List

Bernhard Kuster
contact affiliation	TUM
contact email	kuster@tum.de
lab head
Julia Mergner
contact affiliation	Chair of Proteomics and Bioanalytics, TU Munich
contact email	julia.mergner@tum.de
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/01/PXD013868
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/01/PXD013868

PRIDE project URI

Repository Record List

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