⮝ Full datasets listing
PXD025505
PXD025505 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Synergistic effect of short- and long-read sequencing on functional meta-omics |
| Description | Evaluation of short-read-only, long-read-only, and hybrid assembly approaches on metagenomic samples demonstrating how they affect gene and protein prediction which is relevant for downstream functional analyses. For a human gut microbiome sample, we use complementary metatranscriptomic, and metaproteomic data to evaluate the metagenomic-based protein predictions. |
| HostingRepository | PRIDE |
| AnnounceDate | 2022-02-17 |
| AnnouncementXML | Submission_2022-02-17_00:47:51.863.xml |
| DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD025505 |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Benoit Kunath |
| SpeciesList | scientific name: human gut metagenome; NCBI TaxID: 408170; |
| ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
| Instrument | Q Exactive HF |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2021-04-20 23:04:45 | ID requested | |
| ⏵ 1 | 2022-02-17 00:47:52 | announced |
Publication List
Keyword List
| submitter keyword: metaproteomics, functional omics, long-reads, gdb_metap |
Contact List
| Paul Wilmes | |
|---|---|
| contact affiliation | Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg |
| contact email | paul.wilmes@uni.lu |
| lab head | |
| Benoit Kunath | |
| contact affiliation | LCSB |
| contact email | benoit.kunath@uni.lu |
| dataset submitter | |
Full Dataset Link List
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD025505 |
| PRIDE project URI |
Repository Record List
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