PXD000025-2

PXD000025 is an original dataset announced via ProteomeXchange.

Title	Phosphoproteomic analysis of Rhodopseudomonas palustris
Description	This study is to compare the phosphoproteome of Rhodopseudomonas palustris under photoheterotrophic and chemoheterotrophic states
HostingRepository	PRIDE
AnnounceDate	2012-12-12Z
AnnouncementXML	Submission_2012-12-12_04:03:45.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000025
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Chia-Wei Hu
SpeciesList	scientific name: Rhodopseudomonas palustris; NCBI TaxID: 1076;
ModificationList	monohydroxylated residue; phosphorylated residue; neutral loss: 97.976896; iodoacetamide derivatized residue; neutral loss: 63.998285
Instrument	radial ejection linear ion trap; TripleTOF 5600

Revision	Datetime	Status	ChangeLog Entry
0	2012-09-11 08:26:49	ID requested
1	2012-12-12 03:07:01	announced
1	2014-07-28 00:20:42	announced
⏵ 2	2012-12-12 04:03:45	announced	Add reference
3	2024-10-07 08:41:38	announced	2024-10-07: Updated project metadata.

Hu CW, Lin MH, Huang HC, Ku WC, Yi TH, Tsai CF, Chen YJ, Sugiyama N, Ishihama Y, Juan HF, Wu SH, Phosphoproteomic analysis of Rhodopseudomonas palustris reveals the role of pyruvate phosphate dikinase phosphorylation in lipid production. J Proteome Res, 11(11):5362-75(2012) [pubmed]

submitter keyword: Phosphoprotemics, Rhodopseudomonas palustris

Chia-Wei Hu
contact affiliation	Institute of molecular and cellular biology, National Taiwan university
contact email	hkmq8195@gmail.com

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2012/12/PXD000025

• PRIDE
  1. 27221
     1. InstrumentRef: LTQ_Orbitrap
     2. Label: Rpa_PH_b3_r1
     3. ModificationList: monohydroxylated residue, phosphorylated residue, neutral loss, iodoacetamide derivatized residue, neutral loss,
     4. Name: Rpalustris_PH_Bio3_Run1
     5. PublicationRef: PMID23030682
  2. 27216
     1. InstrumentRef: LTQ_Orbitrap
     2. Label: Rpa_CH_b3_r1
     3. ModificationList: phosphorylated residue, neutral loss, monohydroxylated residue, iodoacetamide derivatized residue,
     4. Name: Rpalustris_CH_Bio3_Run1
     5. PublicationRef: PMID23030682
  3. 27220
     1. InstrumentRef: Triple_TOF
     2. Label: Rpa_PH_b2_r2
     3. ModificationList: phosphorylated residue, monohydroxylated residue, neutral loss, neutral loss, iodoacetamide derivatized residue,
     4. Name: Rpalustris_PH_Bio2_Run2
     5. PublicationRef: PMID23030682
  4. 27215
     1. InstrumentRef: Triple_TOF
     2. Label: Rpa_CH_b2_r2
     3. ModificationList: monohydroxylated residue, phosphorylated residue, neutral loss, neutral loss, iodoacetamide derivatized residue,
     4. Name: Rpalustris_CH_Bio2_Run2
     5. PublicationRef: PMID23030682
  5. 27223
     1. InstrumentRef: LTQ_Orbitrap
     2. Label: Rpa_PH_b3_r3
     3. ModificationList: phosphorylated residue, neutral loss, monohydroxylated residue, iodoacetamide derivatized residue, neutral loss,
     4. Name: Rpalustris_PH_Bio3_Run3
     5. PublicationRef: PMID23030682
  6. 27212
     1. InstrumentRef: Triple_TOF
     2. Label: Rpa_CH_b1_r1
     3. ModificationList: monohydroxylated residue, phosphorylated residue, neutral loss, iodoacetamide derivatized residue, neutral loss,
     4. Name: Rpalustris_CH_Bio1_Run1
     5. PublicationRef: PMID23030682
  7. 27219
     1. InstrumentRef: Triple_TOF
     2. Label: Rpa_PH_b2_r1
     3. ModificationList: phosphorylated residue, monohydroxylated residue, neutral loss, neutral loss, iodoacetamide derivatized residue,
     4. Name: Rpalustris_PH_Bio2_Run1
     5. PublicationRef: PMID23030682
  8. 27218
     1. InstrumentRef: Triple_TOF
     2. Label: Rpa_PH_b1_r1
     3. ModificationList: monohydroxylated residue, phosphorylated residue, neutral loss, neutral loss, iodoacetamide derivatized residue,
     4. Name: Rpalustris_PH_Bio1_Run2
     5. PublicationRef: PMID23030682
  9. 27214
     1. InstrumentRef: Triple_TOF
     2. Label: Rpa_CH_b2_r1
     3. ModificationList: phosphorylated residue, monohydroxylated residue, neutral loss, neutral loss, iodoacetamide derivatized residue,
     4. Name: Rpalustris_CH_Bio2_Run1
     5. PublicationRef: PMID23030682
  10. 27217
      1. InstrumentRef: Triple_TOF
      2. Label: Rpa_PH_TOF_b1_r1
      3. ModificationList: monohydroxylated residue, phosphorylated residue, neutral loss, iodoacetamide derivatized residue, neutral loss,
      4. Name: Rpalustris_PH_TOF_bio1_run1
      5. PublicationRef: PMID23030682
  11. 27222
      1. InstrumentRef: LTQ_Orbitrap
      2. Label: Rpa_PH_b3_r2
      3. ModificationList: monohydroxylated residue, phosphorylated residue, neutral loss, neutral loss, iodoacetamide derivatized residue,
      4. Name: Rpalustris_PH_Bio3_Run2
      5. PublicationRef: PMID23030682
  12. 27213
      1. InstrumentRef: Triple_TOF
      2. Label: Rpa_CH_b1_r2
      3. ModificationList: phosphorylated residue, neutral loss, monohydroxylated residue, neutral loss, iodoacetamide derivatized residue,
      4. Name: Rpalustris_CH_Bio1_Run2
      5. PublicationRef: PMID23030682