PXD000403 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Sphingomonas wittichii RW1 shotgun proteomics |
Description | Chlorinated congeners of dibenzo-p-dioxin and dibenzofuran are widely dispersed pollutants that can be treated using microorganisms, such as the Sphingomonas wittichii RW1 bacterium, able to transform some of them into non-toxic substances. The enzymes of the upper pathway for dibenzo-p-dioxin degradation in S. wittichii RW1 have been biochemically and genetically characterized, but its genome sequence has indicated the existence of a tremendous potential for aromatic compound transformation, with 56 ring-hydroxylating dioxygenase subunits, 34 extradiol dioxygenases, and 40 hydrolases. To further characterize this enzymatic arsenal, new methodological approaches should be employed. Here, a large shotgun proteomic survey has been performed on cells grown on dibenzofuran, dibenzo-p-dioxin, and 2-chlorodibenzo-p-dioxin, and compared to growth on acetate. Changes in the proteome were monitored over time. |
HostingRepository | PRIDE |
AnnounceDate | 2014-07-28 |
AnnouncementXML | Submission_2014-07-28_00:44:03.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD000403 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Jean ARMENGAUD |
SpeciesList | scientific name: Sphingomonas wittichii; NCBI TaxID: 160791; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap; instrument model: LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2013-08-06 03:17:49 | ID requested | |
1 | 2013-10-22 05:43:07 | announced | |
1 | 2013-10-22 08:25:46 | announced | |
⏵ 2 | 2014-07-28 00:44:03 | announced | Updated project metadata. |
3 | 2014-08-08 01:54:51 | announced | Updated project metadata. |
4 | 2024-10-07 09:03:20 | announced | 2024-10-07: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: sphingomonas wittichii RW1 dioxin dibenzofuran |
Contact List
Jean ARMENGAUD |
contact affiliation | SBTN |
contact email | jean.armengaud@cea.fr |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2013/10/PXD000403 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD000403
- Label: PRIDE project
- Name: Sphingomonas wittichii RW1 shotgun proteomics