PXD016254-2

PXD016254 is an original dataset announced via ProteomeXchange.

Title	RBS-ID: Comprehensive identification of RNA-binding sites at single amino acid-resolution
Description	We developed RBS-ID, which greatly simplifies the RNA moiety by chemical cleavage, reducing the complexity of MS/MS search space to accurately identify and localize RBS in peptides. RBS-ID comprehensively and robustly identifies RNA-binding sites at both proteome and single protein level.
HostingRepository	PRIDE
AnnounceDate	2020-06-02
AnnouncementXML	Submission_2020-06-15_02:59:12.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD016254
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Jong Woo Bae
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	Carbamidomethyl
Instrument	Orbitrap Fusion Lumos; Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2019-11-13 01:18:58	ID requested
1	2020-06-02 00:41:15	announced
⏵ 2	2020-06-15 02:59:13	announced	2020-06-15: Updated publication reference for PubMed record(s): 32514175.

Bae JW, Kwon SC, Na Y, Kim VN, Kim JS, Chemical RNA digestion enables robust RNA-binding site mapping at single amino acid resolution. Nat Struct Mol Biol, 27(7):678-682(2020) [pubmed]

submitter keyword: Human, RNA, RBP. RBS, LC-MS/MS

Jong-Seo Kim
contact affiliation	School of Biological Sciences, Seoul National University, Republic of Korea Center for RNA Research, Institute for Basic Science, Republic of Korea
contact email	jongseokim@snu.ac.kr
lab head
Jong Woo Bae
contact affiliation	Seoul National University
contact email	jakenizer@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/06/PXD016254

PRIDE project URI

• PRIDE
  1. PXD016254
     1. Label: PRIDE project
     2. Name: RBS-ID: Comprehensive identification of RNA-binding sites at single amino acid-resolution